These easy gluten-free zucchini muffins are light, tender, and ideal for breakfast, snacks, or school lunches. Fresh zucchini keeps them naturally moist, and you won’t guess they’re gluten-free or dairy-free. This straightforward recipe uses simple ingredients and is ready in under 40 minutes. Whether you’re cooking for picky eaters or aiming for a healthier muffin, this is a reliable recipe you’ll make again and again.

❤️ Sandi’s Summary
- These gluten-free zucchini muffins are a tasty way to hide zucchini.
- Zucchini adds moisture and tenderness — no dry gluten-free muffins here.
- They freeze well and make a quick breakfast, snack, or lunchbox treat.
- Naturally dairy-free, with options for refined sugar-free and nut-free substitutions.
Zucchini is a stealthy vegetable in baked goods — perfect when family members claim they “don’t do zucchini.” Even zucchini skeptics often enjoy these muffins. They’re an excellent way to use garden zucchini or add a bit more nutrition to muffins. I also love that they freeze well for busy mornings and school lunches.

Ingredient Notes and Easy Swaps:
For the full ingredient list and measurements, see the recipe card below.
- Gluten-free flour blend – I tested with King Arthur Measure for Measure and Bob’s Red Mill 1:1. Other blends may work but may require a liquid adjustment. If your blend lacks a binder, add 3/4 teaspoon xanthan gum.
- Almond flour – Adds texture and tenderness; omit and add 1/2 cup extra gluten-free blend for a nut-free version.
- Leaveners – Use aluminum-free baking powder for best results.
- Sugars – Brown or coconut sugar provides moisture and depth. I also add a small amount of cane sugar to brighten flavor; you can swap monk fruit or another sweetener to make them sugar-free.
- Spices – Ground cinnamon adds warm flavor.
- Zucchini – Use freshly grated zucchini and squeeze out excess moisture (see prep tips below).
- Eggs – Provide lift and structure; the recipe uses three large eggs.
- Oil – Mild oils like melted coconut or avocado work well; avoid strong-flavored oils.
- Milk – Non-dairy milk (almond) or regular milk both work.
Ingredient Swaps:
- Make them sugar-free: swap sugar for monk fruit or your preferred zero-calorie sweetener.
- Use coconut sugar instead of brown sugar.
- Replace part of the oil with butter for a 50/50 butter-and-oil mix.
- Add blueberries or chocolate chips to the batter for variety.
How to Prep Zucchini for Baking:
Zucchini contributes moisture, so remove excess liquid to avoid soggy muffins:
- Grate fresh zucchini using a box grater or food processor.
- Wrap the grated zucchini in a clean kitchen towel or paper towels and squeeze out as much liquid as possible before adding to the batter.

A Note From My Kitchen
If your batter seems too thick or too thin, that’s normal—gluten-free blends vary. Add a splash of milk if it’s too thick, or a spoonful of flour if it’s too thin. Let the batter rest 15–20 minutes so rice flour can soften. Shredded zucchini holds a surprising amount of water; when it looks dry, squeeze again with a paper towel to remove extra moisture.
How to Make Gluten-Free Zucchini Muffins (Step-By-Step)

Step 1: Shred and thoroughly dry the zucchini to remove excess moisture; this step prevents soggy muffins.
Step 2: Whisk together the wet ingredients, then fold in the drained zucchini.

Step 3: In a large bowl, whisk together dry ingredients until evenly combined. Pour the wet mixture into the dry and gently stir until just combined — don’t overmix.
Note: Different gluten-free blends absorb liquid differently. If the batter is too runny, add a bit more flour; if it’s too thick, add a splash of milk. Let the batter rest for 15–20 minutes to hydrate the flours.

Step 4: Line a muffin tin with parchment paper liners and fill each cup about 3/4 full.
Step 5: Bake at 350ºF for about 22 minutes, or until a toothpick comes out clean. Baking times vary with oven and pan material. For bakery-style domes, start at 425ºF for 6–8 minutes, then reduce to 350ºF without opening the oven and finish baking.
Step 6: Cool the muffins in the pan for 5 minutes, then transfer to a wire rack. Leaving them in the hot pan too long can dry them out.

If you have extra zucchini, try baking a loaf instead or use it in zucchini bread recipes.
Tips For Fluffy Gluten-Free Muffins:
- Portion evenly: Use a large scoop to fill muffin cups so they bake uniformly.
- Don’t overmix: Combine just until wet and dry ingredients are incorporated to avoid dense muffins.
- Mix by hand: Use a whisk or spoon instead of a stand mixer to prevent overworking the batter.
- Let the batter rest: 15–20 minutes helps rice flour soften and reduces grittiness.
- Use parchment liners: They help prevent sticking and make muffins easier to remove.
Storage and Freezing Tips
- Storing: Keep muffins in an airtight container at room temperature up to 3 days. Refrigerate for longer storage and bring to room temperature or warm slightly before serving.
- Freezing: Cool completely, then freeze in a single layer in a freezer-safe bag or container so they don’t stick together.
- Thawing: Microwave a frozen muffin 20–25 seconds to warm.
Frequently Asked Questions
Yes — pour batter into a greased loaf pan and bake at 350ºF for 40–45 minutes, testing with a toothpick for doneness.
Tops can sink if the oven door is opened during baking or if the batter has too much moisture. Adjust flour or liquid and avoid opening the oven while muffins rise.
Refer to troubleshooting guides for gluten-free muffins and check tools and techniques to improve results.

Hands down the best gluten-free zucchini muffins I’ve ever baked. The instructions are precise and easy to follow. Thank you for an excellent way to use up zucchini. — Sheridan, blog comment
More Gluten-Free Muffin Recipes:
Looking for more gluten-free muffin ideas? A few favorites include gluten-free oatmeal muffins, pumpkin cream cheese muffins, mochi muffins, and banana muffins.
Love This Recipe?
Did you make these gluten-free zucchini muffins? Please leave a comment and let us know how they turned out, including which flour blend you used — it helps other bakers replicate your success.

Fluffy Gluten-Free Zucchini Muffins With Chocolate Chips
Click to Start Cooking
Ingredients
- 2 cups gluten free flour * See notes
- 1 cup almond flour * See notes for nut-free version
- 1 cup brown sugar or coconut sugar
- ¼ cup cane sugar or coconut sugar
- 1 ½ teaspoons ground cinnamon
- 1 teaspoon baking soda
- 1 teaspoon baking powder (aluminum-free)
- ⅛ teaspoon salt
- 1 ½ cups shredded zucchini (pat dry)
- 1 ½ cups non-dairy or regular milk
- ⅓ cup mild cooking oil
- 3 large eggs
- 2 teaspoons pure vanilla extract
- chopped pecans — 1/2 cup
- chocolate chips — 1/2 cup
Equipment
- Muffin pan
- Food processor (optional for shredding)
- Parchment paper muffin liners
Method
- Preheat the oven to 350ºF and position the rack in the middle. For dome tops, preheat to 425ºF.
- Shred the zucchini and pat it dry with paper towels to remove excess moisture.
- Whisk together 1 1/2 cups milk, 1/3 cup oil, 3 large eggs, and 2 teaspoons vanilla. Stir in the shredded zucchini.
- In a large bowl, whisk together 2 cups gluten-free flour, 1 cup almond flour, 1 cup brown or coconut sugar, 1/4 cup cane or coconut sugar, 1 1/2 teaspoons cinnamon, 1 teaspoon baking soda, 1 teaspoon baking powder, and 1/8 teaspoon salt.
- Pour wet ingredients into dry ingredients and gently fold until just combined. Add any optional mix-ins.
- Line a muffin tin with paper liners and fill each cup three-quarters full. Optionally sprinkle tops with shredded coconut.
- For dome tops: bake 5–8 minutes at 425ºF, then lower to 350ºF for the remaining time. For regular tops: bake at 350ºF for 22–25 minutes until a toothpick comes out clean.
- Allow muffins to rest in the pan for 5 minutes, then transfer to a cooling rack.
Nutrition
Calories223kcal
Notes
- I tested this with King Arthur Measure for Measure and Bob’s Red Mill 1:1. Other blends can work but may need moisture adjustments.
- To make nut-free, omit almond flour and add 1/2 cup extra gluten-free flour blend.
- Dry shredded zucchini well — extra moisture will make muffins mushy.
- Mix batter until just combined; overmixing produces dense muffins.
- Store in an airtight container up to 3 days or freeze cooled muffins in a freezer-safe bag.
Tried this recipe?
Let us know how it went!
This post was updated from the original July 2019 version with clearer instructions and extra tips.